Overview
In this section we’ll be revisiting the variant calling workflows from sessions 2 and 3. Specifically we’ll be doing some further analysis of the nfcore/sarek output.
You downloaded the 3 nfcore/sarek runs to H:/workshop/sarek/runs. These are: run2_trio, run3_liver and run4_trio2.
SNPeff and SNPSift
G:\Other computers\Home PC\Desktop\QUT\Liver_exome_variants\sarek