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nf-core pipelines are an organised collection of Nextflow scripts, other non-nextflow scripts (written in any language), configuration files, software specifications, and documentation hosted on GitHub. There is generally a single pipeline for a given data and analysis type e.g. There is a single pipeline for bulk RNA-Seq. All nf-core pipelines are open source.
A defined pipeline structure is used to deploy new pipelines (https://nf-co.re/docs/contributing/pipelines/pipeline_file_structure) and bioinformatics tools are available as a list of modules and subworkflows.
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