...
If you want to keep a copy of the old version that works in your assets then just add the -r parameter and specify the version you would like to run in your nextflow command
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nextflow run eresearchqut/ontvisc -r dev |
The other option is to delete the old version from your nextflow cache located under ~/.nextflow/assets.
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rm -rf ~/.nextflow/assets/eresearchqut/ontvisc |
2. Compilation error
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ERROR ~ Script compilation error - file : /home/gauthiem/code/github/troubleshooting/dev/ontvisc/main.nf - cause: Unexpected input: '{' @ line 382, column 29. process MAPPING_BACK_TO_REF { ^ 1 error -- Check '.nextflow.log' file for details |
This generally means there is a bug in the code included between the brackets for this process and it is unable to compile.
Check your code carefully for any typos.