Common Nextflow errors

1. Nextflow pipeline stickied on revision

If a new pipeline version was released you might get the following error:

You have 2 options:

• If you want to keep a copy of the old version that works in your assets then just add the -r parameter and specify the version you would like to run in your nextflow command

• The other option is to delete the old version from your nextflow cache located under ~/.nextflow/assets.

2. Compilation error

This generally means there is a bug in the code included between the brackets for this process and it is unable to compile.

Check your code carefully for any typos.