Title: Version 3.12.0  
Owner: Magdalena Antczak
Creator: Magdalena Antczak Jul 11, 2023
Last Changed by: Magdalena Antczak Jul 31, 2023
Tiny Link: (useful for email) https://eresearchqut.atlassian.net/wiki/x/EQCudQ
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Time Editor  
Jul 31, 2023 00:05 Magdalena Antczak View Changes
Jul 24, 2023 06:12 Magdalena Antczak View Changes
Jul 20, 2023 00:44 Roberto Barrero Gumiel View Changes
Jul 12, 2023 03:47 Magdalena Antczak  
Outgoing Links
External Links (51)
    https://nf-co.re/rnaseq/3.12.0/output#fastp
    https://nf-co.re/rnaseq/3.12.0/usage
    https://nf-co.re/rnaseq/3.12.0/output#picard-markduplicates
    https://nf-co.re/rnaseq/3.12.0/output#preseq
    https://nf-co.re/rnaseq/3.12.0/output#workflow-reporting-an…
    https://nf-co.re/rnaseq/3.12.0/output#qualimap
    https://nf-co.re/rnaseq/3.12.0/output#reference-genome-file…
    https://nf-co.re/rnaseq/3.12.0/output#deseq2
    https://nf-co.re/rnaseq/3.12.0/output#alignment-and-quantif…
    https://nf-co.re/rnaseq/3.12.0/output#preprocessing
    https://nf-co.re/rnaseq/3.12.0/output#bbsplit
    https://nf-co.re/rnaseq/3.12.0/output#samtools
    https://nf-co.re/rnaseq/3.12.0/output#star-and-salmon
    https://qutvirtual4.qut.edu.au/group/staff/governance/organ…
    https://nf-co.re/rnaseq/3.12.0/output#umi-tools-dedup
    https://sandbox.bio/
    https://nf-co.re/rnaseq/3.12.0/output#salmon
    https://nf-co.re/rnaseq/3.12.0/output#dupradar
    https://nf-co.re/rnaseq/3.12.0/output#pipeline-information
    https://nf-co.re/rnaseq/3.12.0/output#rseqc
    https://github.com/nf-core/rnaseq/blob/master/conf/igenomes…
    https://github.com/nf-core/rnaseq
    https://qutvirtual4.qut.edu.au/group/research-students/cond…
    https://researchcomputing.princeton.edu/education/external-…
    https://nf-co.re/rnaseq/3.12.0/output#quality-control
    https://nf-co.re/rnaseq/3.12.0/output#alignment-post-proces…
    https://nf-co.re/rnaseq/3.12.0/output#cat
    https://girke.bioinformatics.ucr.edu/GEN242/tutorials/
    https://swcarpentry.github.io/shell-novice/
    https://nf-co.re/rnaseq/3.12.0/output#star-via-rsem
    https://missing.csail.mit.edu/2020/editors/
    https://nf-co.re/usage/installation
    https://nf-co.re/rnaseq/3.12.0/output#bedtools-and-bedgraph…
    https://nf-co.re/rnaseq/3.12.0/output#pseudo-alignment-and-…
    https://nf-co.re/rnaseq/3.12.0/output#sortmerna
    https://nf-co.re/rnaseq/3.12.0/output#umi-tools-extract
    https://engineering.purdue.edu/ECN/Support/KB/Docs/Basictut…
    https://nf-co.re/rnaseq/3.12.0/output#featurecounts
    https://nf-co.re/rnaseq/3.12.0/output#other-steps
    https://www.nextflow.io/
    https://www.howtogeek.com/howto/42980/the-beginners-guide-t…
    https://nf-co.re/rnaseq/3.12.0/output#trimgalore
    https://nf-co.re/rnaseq/3.12.0/parameters/#reference-genome…
    https://nf-co.re/rnaseq/3.12.0/parameters/#read-filtering-o…
    https://bioinformatics.uconn.edu/vim-guide/
    https://nf-co.re/rnaseq/3.12.0
    https://nf-co.re/rnaseq/3.12.0/output#stringtie
    https://nf-co.re/rnaseq/3.12.0/output#hisat2
    https://nf-co.re/rnaseq/3.12.0/parameters/
    https://nf-co.re/rnaseq/3.12.0/output#multiqc
    https://nf-co.re/rnaseq/3.12.0/output#fastqc
ER-User Guides (2)     Page: NextFlow quick start
    Page: Version 3.12.0