Aligner | GRCh38-local | GRCh38 | T2T |
|---|---|---|---|
star_salmon |
|
|
|
star_rsem |
|
|
|
hisat2 |
|
|
|
SALMON vs. RSEM gene counts:
No significant changes in feature count values observed for “gene_counts” produced by RSEM or SALMON (see figure below)
Most significant changes observed are similar across all samples, hence, differential expression analysis should produce similar results for SALMON and RSEM.
