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Aim

Analyse 10x Genomics* single cell RNA-Seq data.

*Note: this workflow can be adapted to work with scRNA-Seq datasets generated by other sequencing technologies than 10x Genomics.

Requirements

  1. A HPC account. If you don’t have a

  2. Nextflow installed on your HPC home account

  3. R and RStudio installed

nfcore/

Seurat

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