Snakemake at QUT

Owned by Craig Windell
Oct 30, 2023
1 min read

To use Snakemake on the QUT HPC, a PBS adaptor is required as this cluster system is not built in.

Ben Woodcroft has developed a profile for Snakemake to take advantage of the PBS cluster:

https://docs.google.com/document/d/1l7omlhbzEAtZPF4QDsb_zOa-U-ZiFRq3MU4lpVAjclA

Ben’s Snakemake profile is customised for the Centre of Microbiome Research; however, you can adapt his work to run your own workflows.

GitHub - centre-for-microbiome-research/hpc_scripts: Scripts for easier use of the QUT HPC system